otic translation elongation factor 1 alpha 1, and was further investigated by immunohistochemistry using prostate tissue samples from localized and metastatic cases. The biomarker leads identified in our `discovery’ phase study, including eEF1A1 are discussed in relation to their significance to prostate cancer progression. the time of their initial visit, following written informed consent. Blood sample collection was approved by the Ethics Committee of the University of Sheffield. Serum was collected by allowing the blood to coagulate for 30 min, centrifuged at 1,2006 g for 10 min at 4uC and then stored at 280uC in 100 ml aliquots. All blood samples were collected prior to the administration of any treatment. Twenty serum samples were carefully selected to represent the various stages and grades of prostate disease and pooled, to form 4 patient groups. All patients were actively RU 58841 price monitored for at least 5 years from the time of their initial blood sampling. The 4 patient groups were: Group 1: histological diagnosis of benign prostatic hyperplasia `BPH’, with no evidence of cancer by at least 2 independent sets of prostatic biopsies, and a PSA level below 10 ng/ml. Group 2: histological diagnosis of prostate cancer with a PSA level below 10 ng/ml, and no evidence of a rising PSA following 5 yrs active monitoring – `non-progressing’ group,; Group 3: histological diagnosis of clinically localised cancer with an initial PSA level below 13 ng/ml, followed by 3 consecutive rises in PSA levels during 5 yrs of active monitoring `progressing’ group,; Group 4: patients with a PSA.19 ng/ml and evidence of bone metastasis from a positive radionucleotide bone scan – `metastatic’ group,. The differences in the median ages of the patients were found not to be statistically significant between the 4 groups. The disease characteristics of the 20 patients comprising the 4 groups are shown in Patient tissue material Tissue microarrays, comprised of 56 cases of prostatic adenocarcinoma ranging in single Gleason grades, and 40 cases of adjacent non-malignant tissue, and were constructed as previously described. An additional 23 cases of bone biopsies from patients both with and without prostate cancer skeletal metastasis were obtained by 8 mm trephine biopsy performed under general anesthesia. Informed patient consent and Ethics Committee approval was obtained prior to the study. Cell lines Human prostate cancer cell lines LNCaP, PC-3, DU145 and VCaP were purchased from the American Type Culture Collection,. DuCaP cells were obtained via the PRIMA project consortium. The LNCaP-Pro5, LNCaP-LN3, PC-3M and PC-3M-LN4 cells were a kind gift from Dr. Curtis Pettaway,. The LNCaP-C4-2 and LNCaP-C4-2B cell lines were obtained from Prof. George Thalmann. The TE85 osteosarcoma cells were a kind gift from Prof. J.A. Gallagher, University of Liverpool. All prostate cancer cell lines were cultured as previously described and confirmed to be free from Mycoplasma. IgY-14 affinity depletion of serum samples Pooled serum samples were depleted of the 14 most common plasma PubMed ID:http://www.ncbi.nlm.nih.gov/pubmed/22183349 proteins using the Seppro IgY-14 depletion system. Previous studies have shown that serum pooling followed by depletion of the most highly abundant proteins is an effective strategy to reduce the 
dynamic range of proteins, and thus enhance the identification of serum biomarkers, as demonstrated using the quantitative proteomic method of iTRAQ. Materials and Methods Patients and serum collection Peripheral bl
